I'm not 100% sure I understand what you're trying to show - but if I understand right, I would definitely do it in post (e.g. After Effects, Fusion, Premiere, Final Cut Pro... whatever you fancy) - render a version with finished material, and a version with the transparency effect and then transition between them.
You could equally create a wireframe render version and blend that in post...
I'm sure you could = do it all in 3D, it just seems like a long and complicated solution!