Find some bug with geometry export.
Got export error when using group instanced geometry from another scene in same .blend, render works when I select the "geometry_scene" push Export Objects button or Render, then back to "main_scene" and after that geometry become visible in render.
If I made some changes in geometry_scene I had to go there and re-export objects before render, it's not big problem with one scene, but some times I use a lot of them in my work .blends
I guess it's easier to attach blend example.